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  1. Make sure you have uploaded local changes, backed up local tags and backed up workspace, as advised above.
  2. Stop JIRA Client if it is running.
  3. Locate workspace directory.
  4. Manually remove items.db and items.db-journal files in the workspace directory.
  5. Start JIRA Client.
  6. Run full synchronization using File | Synchronize Reload JIRA configuration using Connection| Reload JIRA Configuration menu item. (The full synchronization may have started on its own - see the application status bar.)
  7. Run queries that you'd like to have downloaded to the local database.